{"id":1,"date":"2023-01-03T15:00:00","date_gmt":"2023-01-03T15:00:00","guid":{"rendered":"https:\/\/s-baxit.optimato.eu\/?p=1"},"modified":"2023-02-22T14:34:38","modified_gmt":"2023-02-22T14:34:38","slug":"ptychography-reconstruction-package-ptypy-now-online","status":"publish","type":"post","link":"https:\/\/s-baxit.optimato.eu\/index.php\/2023\/01\/03\/ptychography-reconstruction-package-ptypy-now-online\/","title":{"rendered":"Ptychography reconstruction package &#8220;ptypy&#8221; now available online"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-post\" data-elementor-id=\"1\" class=\"elementor elementor-1\" data-elementor-post-type=\"post\">\n\t\t\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-ac5eed4 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"ac5eed4\" data-element_type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-4d855110\" data-id=\"4d855110\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-7f0d1963 elementor-widget elementor-widget-text-editor\" data-id=\"7f0d1963\" data-element_type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p>Our <a href=\"https:\/\/s-baxit.optimato.eu\/index.php\/research\/\">ptychography<\/a> reconstruction package\u00a0<strong>ptypy<\/strong>\u00a0is now open-source and\u00a0<a href=\"https:\/\/github.com\/ptycho\/ptypy\/releases\">online<\/a>!<\/p><p>The package has come a long way since its debut at the <a href=\"https:\/\/www.psi.ch\/en\/sls\/csaxs\">cSAXS beamline<\/a> at the Swiss Light Source. The difference map reconstruction algorithm was first implemented in MATLAB with contributions from Martin Dierolf, Andreas Menzel and Cameron Kewish. Its descendant is still in used by the cSAXS group, with large improvements by Manuel Guizar-Sicairos, Ana Diaz, and co-workers.<\/p><p>The Python version has evolved over a few years in <a href=\"https:\/\/www.ph.nat.tum.de\/en\/e17\/home\/\">Franz Pfeiffer\u2019s group<\/a>, with important contributions from Marco Stockmar, Bj\u00f6rn Enders, Benedikt Daurer, Philipp Pelz, as well as feedback and bug reports from many others. In 2013, we have started a complete redesign of the code, which got completed only in mid-2014, thanks mostly to Bj\u00f6rn\u2019s huge effort. The new modular and object-oriented design will make maintenance and upgrades much easier.<\/p><p>Among the cutting-edge features already implemented:<\/p><ul><li>Fully parallelized (using MPI)<\/li><li>Difference map algorithm with power bound constraint<\/li><li>Maximum Likelihood with preconditioners and regularizers<\/li><li>Mixed-state reconstructions of probe and object<\/li><li>On-the-fly reconstructions (while data is being acquired)<\/li><\/ul><p>With its open-source release, we hope that the package will find a stable user base. Bug reports, enhancement requests and, of course, contributions are very welcome!<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>Our ptychography reconstruction package&nbsp;ptypy&nbsp;is now open-source and&nbsp;online! The package has come a long way since its debut at the cSAXS beamline at the Swiss Light Source. The difference map reconstruction algorithm was first implemented in MATLAB with contributions from Martin Dierolf, Andreas Menzel and Cameron Kewish. Its descendant is still in used by the cSAXS&hellip; <a class=\"more-link\" href=\"https:\/\/s-baxit.optimato.eu\/index.php\/2023\/01\/03\/ptychography-reconstruction-package-ptypy-now-online\/\">Continue reading <span class=\"screen-reader-text\">Ptychography reconstruction package &#8220;ptypy&#8221; now available online<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":231,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[11],"tags":[],"class_list":["post-1","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-events","entry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v25.9 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Ptychography reco package ptypy now online<\/title>\n<meta name=\"description\" content=\"Our ptychography reconstruction package ptypy is now open-source and online!The package has come a long way since its debut at the cSAXS beamline at the Swiss Light Source.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/s-baxit.optimato.eu\/index.php\/2023\/01\/03\/ptychography-reconstruction-package-ptypy-now-online\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Ptychography reco package ptypy now online\" \/>\n<meta property=\"og:description\" content=\"Our ptychography reconstruction package ptypy is now open-source and online!The package has come a long way since its debut at the cSAXS beamline at the Swiss Light Source.\" \/>\n<meta property=\"og:url\" content=\"https:\/\/s-baxit.optimato.eu\/index.php\/2023\/01\/03\/ptychography-reconstruction-package-ptypy-now-online\/\" \/>\n<meta property=\"og:site_name\" content=\"S-BaXIT\" \/>\n<meta property=\"article:published_time\" content=\"2023-01-03T15:00:00+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2023-02-22T14:34:38+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/s-baxit.optimato.eu\/wp-content\/uploads\/2021\/04\/img_2.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"800\" \/>\n\t<meta property=\"og:image:height\" content=\"600\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"author\" content=\"admin\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@OptImaToGroup\" \/>\n<meta name=\"twitter:site\" content=\"@OptImaToGroup\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"admin\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"Article\",\"@id\":\"https:\/\/s-baxit.optimato.eu\/index.php\/2023\/01\/03\/ptychography-reconstruction-package-ptypy-now-online\/#article\",\"isPartOf\":{\"@id\":\"https:\/\/s-baxit.optimato.eu\/index.php\/2023\/01\/03\/ptychography-reconstruction-package-ptypy-now-online\/\"},\"author\":{\"name\":\"admin\",\"@id\":\"https:\/\/s-baxit.optimato.eu\/#\/schema\/person\/002c9168d5125ad5d76b641927f82216\"},\"headline\":\"Ptychography reconstruction package &#8220;ptypy&#8221; 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